SRR20408780 - S. litura

Basic Information

Run: SRR20408780

Assay Type: AMPLICON

Biosample: SAMN29888041

Bytes: 66191047

Center Name: UNIVERSITY OF DELHI

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA861161

Geographic Information

Country: India

Continent: Asia

Location Name: India:Delhi

Latitude/Longitude: 28.6913 N 77.2113 E

Sample Information

Host: S. litura

Isolation: -

Biosample Model: -

Collection Date: 2021-07-09

Host Sex: -

Environmental Information

Broad Scale: Host Environment

Local Scale: Irradiated Gut at 100Gy

Medium: Body of the insect

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR20408780
63.1 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 9
Aerobic_Chemoheterotrophy 5
Fermentation 3
Aromatic_Hydrocarbon_Degradation 1
Aromatic_Compound_Degradation 1
Hydrocarbon_Degradation 1
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