SRR20284913 - Salmo salar

Basic Information

Run: SRR20284913

Assay Type: AMPLICON

Biosample: SAMN29714616

Bytes: 26686331

Center Name: UNIVERSITY OF ABERDEEN

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA858404

Geographic Information

Country: Norway

Continent: Europe

Location Name: Norway: NOFIMA Sunndalsora

Latitude/Longitude: not collected

Sample Information

Host: Salmo salar

Isolation: -

Biosample Model: -

Collection Date: 2020-05-01

Host Sex: -

Environmental Information

Broad Scale: aquaculture

Local Scale: recirculating aquaculture system

Medium: seawater

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR20284913
25.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

No functional annotation data available

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