SRR20001362 - Acipenser fulvescens

Basic Information

Run: SRR20001362

Assay Type: AMPLICON

Biosample: SAMN29488106

Bytes: 17448057

Center Name: MICHIGAN STATE UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA855298

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Cheboygan

Latitude/Longitude: 45.3917 N 84.3328 W

Sample Information

Host: Acipenser fulvescens

Isolation: -

Biosample Model: -

Collection Date: 2015-06-01

Host Sex: -

Environmental Information

Broad Scale: not applicable

Local Scale: not applicable

Medium: not applicable

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR20001362

16.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 102

Chemoheterotrophy

Aerobic_Chemoheterotrophy 78

Aerobic_Chemoheterotrophy

Phototrophy 27

Phototrophy

Photosynthetic_Cyanobacteria 25

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 25

Oxygenic_Photoautotrophy

Photoautotrophy 25

Photoautotrophy

Methylotrophy 17

Methylotrophy

Methanol_Oxidation 13

Methanol_Oxidation

Nitrate_Reduction 10

Nitrate_Reduction

Fermentation 8

Fermentation

Aromatic_Compound_Degradation 7

Aromatic_Compound_Degradation

Hydrocarbon_Degradation 5

Hydrocarbon_Degradation

Nitrate_Respiration 5

Nitrate_Respiration

Nitrogen_Respiration 5

Nitrogen_Respiration

Methanotrophy 4

Methanotrophy

Animal_Parasites_Or_Symbionts 3

Animal_Parasites_Or_Symbionts

Human_Pathogens_All 2

Human_Pathogens_All

Human_Associated 2

Human_Associated

Photoheterotrophy 2

Photoheterotrophy

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Chitinolysis 1

Chitinolysis

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrogen_Fixation 1

Nitrogen_Fixation

Nitrite_Respiration 1

Nitrite_Respiration

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Intracellular_Parasites 1

Intracellular_Parasites

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

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