SRR20001358 - Acipenser fulvescens

Basic Information

Run: SRR20001358

Assay Type: AMPLICON

Biosample: SAMN29488127

Bytes: 21488439

Center Name: MICHIGAN STATE UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA855298

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Cheboygan

Latitude/Longitude: 45.3917 N 84.3328 W

Sample Information

Host: Acipenser fulvescens

Isolation: -

Biosample Model: -

Collection Date: 2015-06-04

Host Sex: -

Environmental Information

Broad Scale: not applicable

Local Scale: not applicable

Medium: not applicable

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR20001358
20.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 105
Aerobic_Chemoheterotrophy 83
Methylotrophy 18
Methanol_Oxidation 14
Nitrate_Reduction 11
Phototrophy 8
Ureolysis 7
Methanotrophy 5
Fermentation 5
Hydrocarbon_Degradation 5
Predatory_Or_Exoparasitic 5
Photosynthetic_Cyanobacteria 5
Oxygenic_Photoautotrophy 5
Photoautotrophy 5
Animal_Parasites_Or_Symbionts 4
Aromatic_Compound_Degradation 4
Nitrogen_Fixation 3
Human_Pathogens_All 3
Human_Associated 3
Nitrate_Respiration 3
Nitrogen_Respiration 3
Photoheterotrophy 3
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Chitinolysis 1
Nitrite_Respiration 1
Intracellular_Parasites 1
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