SRR20001357 - Acipenser fulvescens

Basic Information

Run: SRR20001357

Assay Type: AMPLICON

Biosample: SAMN29488128

Bytes: 25337777

Center Name: MICHIGAN STATE UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA855298

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Cheboygan

Latitude/Longitude: 45.3917 N 84.3328 W

Sample Information

Host: Acipenser fulvescens

Isolation: -

Biosample Model: -

Collection Date: 2015-06-04

Host Sex: -

Environmental Information

Broad Scale: not applicable

Local Scale: not applicable

Medium: not applicable

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download

OTU Sequences

FASTA file of OTU sequences

Download

FAPROTAX Report

Functional annotation of Amplicon

Download

VSEARCH Taxon

VSEARCH taxonomic composition classification

Download

QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR20001357

24.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 119

Chemoheterotrophy

Aerobic_Chemoheterotrophy 89

Aerobic_Chemoheterotrophy

Methylotrophy 24

Methylotrophy

Methanol_Oxidation 20

Methanol_Oxidation

Nitrate_Reduction 10

Nitrate_Reduction

Ureolysis 9

Ureolysis

Hydrocarbon_Degradation 7

Hydrocarbon_Degradation

Animal_Parasites_Or_Symbionts 5

Animal_Parasites_Or_Symbionts

Aromatic_Compound_Degradation 5

Aromatic_Compound_Degradation

Predatory_Or_Exoparasitic 5

Predatory_Or_Exoparasitic

Methanotrophy 4

Methanotrophy

Fermentation 4

Fermentation

Human_Pathogens_All 4

Human_Pathogens_All

Human_Associated 4

Human_Associated

Nitrate_Respiration 4

Nitrate_Respiration

Nitrogen_Respiration 4

Nitrogen_Respiration

Phototrophy 4

Phototrophy

Intracellular_Parasites 3

Intracellular_Parasites

Photoheterotrophy 3

Photoheterotrophy

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Chitinolysis 1

Chitinolysis

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrogen_Fixation 1

Nitrogen_Fixation

Nitrite_Respiration 1

Nitrite_Respiration

Cellulolysis 1

Cellulolysis

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Plant_Pathogen 1

Plant_Pathogen

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Back to Amplicons List

Back to Table