SRR20001340 - Acipenser fulvescens

Basic Information

Run: SRR20001340

Assay Type: AMPLICON

Biosample: SAMN29488108

Bytes: 24431405

Center Name: MICHIGAN STATE UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA855298

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Cheboygan

Latitude/Longitude: 45.3917 N 84.3328 W

Sample Information

Host: Acipenser fulvescens

Isolation: -

Biosample Model: -

Collection Date: 2015-06-01

Host Sex: -

Environmental Information

Broad Scale: not applicable

Local Scale: not applicable

Medium: not applicable

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR20001340

23.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 51

Chemoheterotrophy

Aerobic_Chemoheterotrophy 40

Aerobic_Chemoheterotrophy

Nitrate_Reduction 9

Nitrate_Reduction

Methanol_Oxidation 7

Methanol_Oxidation

Methylotrophy 7

Methylotrophy

Phototrophy 7

Phototrophy

Fermentation 6

Fermentation

Photosynthetic_Cyanobacteria 5

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 5

Oxygenic_Photoautotrophy

Photoautotrophy 5

Photoautotrophy

Animal_Parasites_Or_Symbionts 4

Animal_Parasites_Or_Symbionts

Nitrate_Respiration 4

Nitrate_Respiration

Nitrogen_Respiration 4

Nitrogen_Respiration

Human_Pathogens_All 3

Human_Pathogens_All

Human_Associated 3

Human_Associated

Aromatic_Compound_Degradation 3

Aromatic_Compound_Degradation

Ureolysis 3

Ureolysis

Photoheterotrophy 2

Photoheterotrophy

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Chitinolysis 1

Chitinolysis

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrite_Respiration 1

Nitrite_Respiration

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

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