SRR19542944 - Herbivores Repeat 2

Basic Information

Run: SRR19542944

Assay Type: AMPLICON

Biosample: SAMN28862520

Bytes: 15351443

Center Name: GUANGXI UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA845818

Quality Control Information

Filter Percentage: 1.0

QC Average Length: 301

Retained Reads: 0

Geographic Information

Country: China

Continent: Asia

Location Name: China: Fusui County, Guangxi

Sample Information

Host: Herbivores Repeat 2

Isolation: -

Biosample Model: -

Collection Date: 2021-06-10

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR19542944
14.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 43
Aerobic_Chemoheterotrophy 41
Intracellular_Parasites 39
Nitrogen_Fixation 16
Ureolysis 6
Human_Pathogens_All 3
Human_Associated 3
Animal_Parasites_Or_Symbionts 3
Nitrate_Respiration 3
Nitrate_Reduction 3
Nitrogen_Respiration 3
Fermentation 2
Aromatic_Compound_Degradation 1
Predatory_Or_Exoparasitic 1
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