SRR19521767 - Spodoptera frugiperda

Basic Information

Run: SRR19521767

Assay Type: AMPLICON

Biosample: SAMN28835930

Bytes: 12933055

Center Name: SOUTHWEST FORESTRY UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA844607

Geographic Information

Country: China

Continent: Asia

Location Name: China: Kunming

Latitude/Longitude: 25.06 N 102.75 E

Sample Information

Host: Spodoptera frugiperda

Isolation: -

Biosample Model: -

Collection Date: 2021-07-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR19521767

12.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 35

Chemoheterotrophy

Aerobic_Chemoheterotrophy 19

Aerobic_Chemoheterotrophy

Fermentation 18

Fermentation

Nonphotosynthetic_Cyanobacteria 11

Nonphotosynthetic_Cyanobacteria

Animal_Parasites_Or_Symbionts 5

Animal_Parasites_Or_Symbionts

Nitrate_Reduction 5

Nitrate_Reduction

Nitrogen_Fixation 3

Nitrogen_Fixation

Human_Associated 3

Human_Associated

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Human_Gut 2

Human_Gut

Mammal_Gut 2

Mammal_Gut

Nitrate_Respiration 2

Nitrate_Respiration

Nitrogen_Respiration 2

Nitrogen_Respiration

Predatory_Or_Exoparasitic 2

Predatory_Or_Exoparasitic

Ureolysis 2

Ureolysis

Methanogenesis_By_Co2_Reduction_With_H2 1

Methanogenesis_By_Co2_Reduction_With_H2

Hydrogenotrophic_Methanogenesis 1

Hydrogenotrophic_Methanogenesis

Methanogenesis 1

Methanogenesis

Methanol_Oxidation 1

Methanol_Oxidation

Methylotrophy 1

Methylotrophy

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Chitinolysis 1

Chitinolysis

Nitrite_Respiration 1

Nitrite_Respiration

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_All 1

Human_Pathogens_All

Aromatic_Compound_Degradation 1

Aromatic_Compound_Degradation

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