SRR19521748 - Spodoptera frugiperda

Basic Information

Run: SRR19521748

Assay Type: AMPLICON

Biosample: SAMN28835948

Bytes: 12273552

Center Name: SOUTHWEST FORESTRY UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA844607

Geographic Information

Country: China

Continent: Asia

Location Name: China: Kunming

Latitude/Longitude: 25.06 N 102.75 E

Sample Information

Host: Spodoptera frugiperda

Isolation: -

Biosample Model: -

Collection Date: 2021-07-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR19521748
11.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 52
Aerobic_Chemoheterotrophy 45
Fermentation 5
Ureolysis 5
Aromatic_Compound_Degradation 4
Methanol_Oxidation 3
Methylotrophy 3
Nitrogen_Fixation 3
Human_Associated 2
Animal_Parasites_Or_Symbionts 2
Nitrate_Reduction 2
Nonphotosynthetic_Cyanobacteria 2
Phototrophy 2
Dark_Oxidation_Of_Sulfur_Compounds 1
Human_Pathogens_All 1
Human_Gut 1
Mammal_Gut 1
Iron_Respiration 1
Nitrate_Respiration 1
Nitrogen_Respiration 1
Fumarate_Respiration 1
Photosynthetic_Cyanobacteria 1
Oxygenic_Photoautotrophy 1
Photoautotrophy 1
Aerobic_Anoxygenic_Phototrophy 1
Photoheterotrophy 1
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