SRR19521734 - Spodoptera frugiperda

Basic Information

Run: SRR19521734

Assay Type: AMPLICON

Biosample: SAMN28835929

Bytes: 14026320

Center Name: SOUTHWEST FORESTRY UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA844607

Geographic Information

Country: China

Continent: Asia

Location Name: China: Kunming

Latitude/Longitude: 25.06 N 102.75 E

Sample Information

Host: Spodoptera frugiperda

Isolation: -

Biosample Model: -

Collection Date: 2021-07-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR19521734

13.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 42

Chemoheterotrophy

Aerobic_Chemoheterotrophy 35

Aerobic_Chemoheterotrophy

Fermentation 7

Fermentation

Nitrogen_Fixation 5

Nitrogen_Fixation

Nitrate_Reduction 5

Nitrate_Reduction

Ureolysis 5

Ureolysis

Animal_Parasites_Or_Symbionts 3

Animal_Parasites_Or_Symbionts

Nitrate_Respiration 3

Nitrate_Respiration

Nitrogen_Respiration 3

Nitrogen_Respiration

Nonphotosynthetic_Cyanobacteria 3

Nonphotosynthetic_Cyanobacteria

Human_Associated 2

Human_Associated

Predatory_Or_Exoparasitic 2

Predatory_Or_Exoparasitic

Photosynthetic_Cyanobacteria 2

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 2

Oxygenic_Photoautotrophy

Photoautotrophy 2

Photoautotrophy

Phototrophy 2

Phototrophy

Methanol_Oxidation 1

Methanol_Oxidation

Methylotrophy 1

Methylotrophy

Aerobic_Nitrite_Oxidation 1

Aerobic_Nitrite_Oxidation

Nitrification 1

Nitrification

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrite_Respiration 1

Nitrite_Respiration

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_All 1

Human_Pathogens_All

Human_Gut 1

Human_Gut

Mammal_Gut 1

Mammal_Gut

Aromatic_Compound_Degradation 1

Aromatic_Compound_Degradation

Iron_Respiration 1

Iron_Respiration

Fumarate_Respiration 1

Fumarate_Respiration

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