SRR19449875 - Psylliodes attenuatus

Basic Information

Run: SRR19449875

Assay Type: AMPLICON

Biosample: SAMN28772369

Bytes: 32136713

Center Name: INSTITUTE OF BAST FIBER CROPS CHINESE ACADEMY OF AGRICULTURAL SCIENCES

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA843905

Geographic Information

Country: China

Continent: Asia

Location Name: China: Anhui, Wangqiao Village

Latitude/Longitude: 31.67 N 116.357 E

Sample Information

Host: Psylliodes attenuatus

Isolation: -

Biosample Model: -

Collection Date: 2019-07-30

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR19449875
30.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 45
Aerobic_Chemoheterotrophy 19
Fermentation 18
Aromatic_Compound_Degradation 9
Nitrate_Reduction 5
Hydrocarbon_Degradation 4
Animal_Parasites_Or_Symbionts 3
Intracellular_Parasites 3
Ureolysis 3
Methanotrophy 2
Methylotrophy 2
Human_Associated 2
Dark_Hydrogen_Oxidation 1
Nitrogen_Fixation 1
Human_Pathogens_All 1
Human_Gut 1
Mammal_Gut 1
Aromatic_Hydrocarbon_Degradation 1
Nitrate_Respiration 1
Nitrogen_Respiration 1
Nonphotosynthetic_Cyanobacteria 1
Photosynthetic_Cyanobacteria 1
Oxygenic_Photoautotrophy 1
Photoautotrophy 1
Phototrophy 1
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