SRR19449874 - Psylliodes attenuatus

Basic Information

Run: SRR19449874

Assay Type: AMPLICON

Biosample: SAMN28772387

Bytes: 34930811

Center Name: INSTITUTE OF BAST FIBER CROPS CHINESE ACADEMY OF AGRICULTURAL SCIENCES

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA843905

Geographic Information

Country: China

Continent: Asia

Location Name: China: Hunan, Shijihu

Latitude/Longitude: 28.8 N 112.36 E

Sample Information

Host: Psylliodes attenuatus

Isolation: -

Biosample Model: -

Collection Date: 2019-08-30

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR19449874

33.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 104

Chemoheterotrophy

Aerobic_Chemoheterotrophy 70

Aerobic_Chemoheterotrophy

Fermentation 26

Fermentation

Predatory_Or_Exoparasitic 15

Predatory_Or_Exoparasitic

Animal_Parasites_Or_Symbionts 10

Animal_Parasites_Or_Symbionts

Nitrate_Reduction 10

Nitrate_Reduction

Human_Associated 9

Human_Associated

Aromatic_Compound_Degradation 8

Aromatic_Compound_Degradation

Nitrate_Respiration 7

Nitrate_Respiration

Nitrogen_Respiration 7

Nitrogen_Respiration

Human_Gut 6

Human_Gut

Mammal_Gut 6

Mammal_Gut

Methylotrophy 5

Methylotrophy

Human_Pathogens_All 4

Human_Pathogens_All

Hydrocarbon_Degradation 4

Hydrocarbon_Degradation

Nonphotosynthetic_Cyanobacteria 4

Nonphotosynthetic_Cyanobacteria

Ureolysis 4

Ureolysis

Methanotrophy 3

Methanotrophy

Nitrate_Denitrification 3

Nitrate_Denitrification

Nitrite_Denitrification 3

Nitrite_Denitrification

Denitrification 3

Denitrification

Chitinolysis 3

Chitinolysis

Nitrite_Respiration 3

Nitrite_Respiration

Methanol_Oxidation 2

Methanol_Oxidation

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 2

Dark_Oxidation_Of_Sulfur_Compounds

Intracellular_Parasites 2

Intracellular_Parasites

Nitrogen_Fixation 1

Nitrogen_Fixation

Cellulolysis 1

Cellulolysis

Xylanolysis 1

Xylanolysis

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Manganese_Respiration 1

Manganese_Respiration

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Iron_Respiration 1

Iron_Respiration

Photoheterotrophy 1

Photoheterotrophy

Phototrophy 1

Phototrophy

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