SRR19449873 - Psylliodes attenuatus

Basic Information

Run: SRR19449873

Assay Type: AMPLICON

Biosample: SAMN28772388

Bytes: 33279399

Center Name: INSTITUTE OF BAST FIBER CROPS CHINESE ACADEMY OF AGRICULTURAL SCIENCES

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA843905

Geographic Information

Country: China

Continent: Asia

Location Name: China: Hunan, Shijihu

Latitude/Longitude: 28.8 N 112.36 E

Sample Information

Host: Psylliodes attenuatus

Isolation: -

Biosample Model: -

Collection Date: 2019-08-30

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR19449873

31.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 104

Chemoheterotrophy

Fermentation 70

Fermentation

Aerobic_Chemoheterotrophy 32

Aerobic_Chemoheterotrophy

Animal_Parasites_Or_Symbionts 20

Animal_Parasites_Or_Symbionts

Human_Associated 17

Human_Associated

Human_Gut 13

Human_Gut

Mammal_Gut 13

Mammal_Gut

Nitrate_Reduction 10

Nitrate_Reduction

Aromatic_Compound_Degradation 7

Aromatic_Compound_Degradation

Nonphotosynthetic_Cyanobacteria 6

Nonphotosynthetic_Cyanobacteria

Human_Pathogens_All 5

Human_Pathogens_All

Nitrate_Respiration 5

Nitrate_Respiration

Nitrogen_Respiration 5

Nitrogen_Respiration

Ureolysis 4

Ureolysis

Respiration_Of_Sulfur_Compounds 3

Respiration_Of_Sulfur_Compounds

Sulfate_Respiration 2

Sulfate_Respiration

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Xylanolysis 2

Xylanolysis

Human_Pathogens_Diarrhea 2

Human_Pathogens_Diarrhea

Hydrocarbon_Degradation 2

Hydrocarbon_Degradation

Methanotrophy 1

Methanotrophy

Methylotrophy 1

Methylotrophy

Sulfur_Respiration 1

Sulfur_Respiration

Thiosulfate_Respiration 1

Thiosulfate_Respiration

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Chitinolysis 1

Chitinolysis

Nitrogen_Fixation 1

Nitrogen_Fixation

Nitrite_Respiration 1

Nitrite_Respiration

Human_Pathogens_Septicemia 1

Human_Pathogens_Septicemia

Human_Pathogens_Pneumonia 1

Human_Pathogens_Pneumonia

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Intracellular_Parasites 1

Intracellular_Parasites

Reductive_Acetogenesis 1

Reductive_Acetogenesis

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