SRR19449872 - Psylliodes attenuatus

Basic Information

Run: SRR19449872

Assay Type: AMPLICON

Biosample: SAMN28772389

Bytes: 28868859

Center Name: INSTITUTE OF BAST FIBER CROPS CHINESE ACADEMY OF AGRICULTURAL SCIENCES

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA843905

Geographic Information

Country: China

Continent: Asia

Location Name: China: Hunan, Shijihu

Latitude/Longitude: 28.8 N 112.36 E

Sample Information

Host: Psylliodes attenuatus

Isolation: -

Biosample Model: -

Collection Date: 2019-08-30

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR19449872
27.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 116
Aerobic_Chemoheterotrophy 74
Fermentation 28
Animal_Parasites_Or_Symbionts 14
Human_Associated 13
Nitrate_Reduction 11
Predatory_Or_Exoparasitic 10
Ureolysis 9
Human_Pathogens_All 8
Human_Gut 8
Mammal_Gut 8
Aromatic_Compound_Degradation 8
Nitrate_Respiration 6
Nitrogen_Respiration 6
Methylotrophy 5
Nitrogen_Fixation 4
Methanol_Oxidation 3
Chitinolysis 3
Dark_Hydrogen_Oxidation 3
Hydrocarbon_Degradation 3
Methanotrophy 2
Nitrate_Denitrification 2
Nitrite_Denitrification 2
Denitrification 2
Nitrite_Respiration 2
Cellulolysis 2
Nonphotosynthetic_Cyanobacteria 2
Phototrophy 2
Dark_Oxidation_Of_Sulfur_Compounds 1
Manganese_Respiration 1
Aromatic_Hydrocarbon_Degradation 1
Iron_Respiration 1
Intracellular_Parasites 1
Photosynthetic_Cyanobacteria 1
Oxygenic_Photoautotrophy 1
Photoautotrophy 1
Photoheterotrophy 1
Back to Amplicons List
Back to Table