SRR19449871 - Psylliodes attenuatus

Basic Information

Run: SRR19449871

Assay Type: AMPLICON

Biosample: SAMN28772390

Bytes: 34260515

Center Name: INSTITUTE OF BAST FIBER CROPS CHINESE ACADEMY OF AGRICULTURAL SCIENCES

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA843905

Geographic Information

Country: China

Continent: Asia

Location Name: China: Hunan, Shijihu

Latitude/Longitude: 28.8 N 112.36 E

Sample Information

Host: Psylliodes attenuatus

Isolation: -

Biosample Model: -

Collection Date: 2019-08-30

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR19449871

32.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 202

Chemoheterotrophy

Aerobic_Chemoheterotrophy 109

Aerobic_Chemoheterotrophy

Fermentation 26

Fermentation

Aromatic_Compound_Degradation 16

Aromatic_Compound_Degradation

Predatory_Or_Exoparasitic 13

Predatory_Or_Exoparasitic

Nitrate_Reduction 11

Nitrate_Reduction

Human_Associated 8

Human_Associated

Animal_Parasites_Or_Symbionts 8

Animal_Parasites_Or_Symbionts

Ureolysis 7

Ureolysis

Nitrate_Respiration 6

Nitrate_Respiration

Nitrogen_Respiration 6

Nitrogen_Respiration

Human_Pathogens_All 5

Human_Pathogens_All

Phototrophy 5

Phototrophy

Human_Gut 4

Human_Gut

Mammal_Gut 4

Mammal_Gut

Intracellular_Parasites 4

Intracellular_Parasites

Nonphotosynthetic_Cyanobacteria 4

Nonphotosynthetic_Cyanobacteria

Photosynthetic_Cyanobacteria 4

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 4

Oxygenic_Photoautotrophy

Photoautotrophy 4

Photoautotrophy

Methylotrophy 3

Methylotrophy

Chitinolysis 3

Chitinolysis

Nitrogen_Fixation 3

Nitrogen_Fixation

Methanol_Oxidation 2

Methanol_Oxidation

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Nitrite_Respiration 2

Nitrite_Respiration

Xylanolysis 2

Xylanolysis

Dark_Oxidation_Of_Sulfur_Compounds 2

Dark_Oxidation_Of_Sulfur_Compounds

Hydrocarbon_Degradation 2

Hydrocarbon_Degradation

Methanotrophy 1

Methanotrophy

Sulfate_Respiration 1

Sulfate_Respiration

Respiration_Of_Sulfur_Compounds 1

Respiration_Of_Sulfur_Compounds

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Cellulolysis 1

Cellulolysis

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Manganese_Oxidation 1

Manganese_Oxidation

Manganese_Respiration 1

Manganese_Respiration

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Dark_Iron_Oxidation 1

Dark_Iron_Oxidation

Iron_Respiration 1

Iron_Respiration

Photoheterotrophy 1

Photoheterotrophy

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