SRR19449855 - Psylliodes attenuatus

Basic Information

Run: SRR19449855

Assay Type: AMPLICON

Biosample: SAMN28772373

Bytes: 35438775

Center Name: INSTITUTE OF BAST FIBER CROPS CHINESE ACADEMY OF AGRICULTURAL SCIENCES

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA843905

Geographic Information

Country: China

Continent: Asia

Location Name: China: Anhui, Luan

Latitude/Longitude: 31.806 N 116.519 E

Sample Information

Host: Psylliodes attenuatus

Isolation: -

Biosample Model: -

Collection Date: 2019-07-30

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR19449855

33.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 40

Chemoheterotrophy

Aerobic_Chemoheterotrophy 23

Aerobic_Chemoheterotrophy

Fermentation 12

Fermentation

Aromatic_Compound_Degradation 8

Aromatic_Compound_Degradation

Nitrate_Reduction 6

Nitrate_Reduction

Ureolysis 5

Ureolysis

Methylotrophy 3

Methylotrophy

Animal_Parasites_Or_Symbionts 3

Animal_Parasites_Or_Symbionts

Hydrocarbon_Degradation 3

Hydrocarbon_Degradation

Intracellular_Parasites 3

Intracellular_Parasites

Methanol_Oxidation 2

Methanol_Oxidation

Human_Pathogens_All 2

Human_Pathogens_All

Human_Associated 2

Human_Associated

Nitrate_Respiration 2

Nitrate_Respiration

Nitrogen_Respiration 2

Nitrogen_Respiration

Methanotrophy 1

Methanotrophy

Sulfate_Respiration 1

Sulfate_Respiration

Respiration_Of_Sulfur_Compounds 1

Respiration_Of_Sulfur_Compounds

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrogen_Fixation 1

Nitrogen_Fixation

Nitrite_Respiration 1

Nitrite_Respiration

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

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