SRR19449854 - Psylliodes attenuatus

Basic Information

Run: SRR19449854

Assay Type: AMPLICON

Biosample: SAMN28772374

Bytes: 40222016

Center Name: INSTITUTE OF BAST FIBER CROPS CHINESE ACADEMY OF AGRICULTURAL SCIENCES

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA843905

Geographic Information

Country: China

Continent: Asia

Location Name: China: Anhui, Luan

Latitude/Longitude: 31.806 N 116.519 E

Sample Information

Host: Psylliodes attenuatus

Isolation: -

Biosample Model: -

Collection Date: 2019-07-30

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR19449854

38.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 47

Chemoheterotrophy

Aerobic_Chemoheterotrophy 23

Aerobic_Chemoheterotrophy

Fermentation 19

Fermentation

Aromatic_Compound_Degradation 8

Aromatic_Compound_Degradation

Ureolysis 6

Ureolysis

Animal_Parasites_Or_Symbionts 5

Animal_Parasites_Or_Symbionts

Human_Associated 4

Human_Associated

Methanol_Oxidation 3

Methanol_Oxidation

Methylotrophy 3

Methylotrophy

Nitrogen_Fixation 3

Nitrogen_Fixation

Human_Gut 3

Human_Gut

Mammal_Gut 3

Mammal_Gut

Nitrate_Reduction 3

Nitrate_Reduction

Nitrate_Respiration 2

Nitrate_Respiration

Nitrogen_Respiration 2

Nitrogen_Respiration

Intracellular_Parasites 2

Intracellular_Parasites

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrite_Respiration 1

Nitrite_Respiration

Manganese_Oxidation 1

Manganese_Oxidation

Human_Pathogens_All 1

Human_Pathogens_All

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Dark_Iron_Oxidation 1

Dark_Iron_Oxidation

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

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