SRR19216020 - Cnaphalococis medinalis

Basic Information

Run: SRR19216020

Assay Type: AMPLICON

Biosample: SAMN14086213

Bytes: 26880426

Center Name: ZHEJIANG ACADEMY OF AGRICULTURAL SCIENCES

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA838393

Geographic Information

Country: China

Continent: Asia

Location Name: China: Hangzhou

Sample Information

Host: Cnaphalococis medinalis

Isolation: -

Biosample Model: -

Collection Date: -

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR19216020
25.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 54
Aerobic_Chemoheterotrophy 31
Fermentation 12
Nitrate_Reduction 10
Nitrate_Respiration 6
Nitrogen_Respiration 6
Sulfate_Respiration 5
Respiration_Of_Sulfur_Compounds 5
Human_Pathogens_All 5
Human_Associated 5
Animal_Parasites_Or_Symbionts 5
Aromatic_Compound_Degradation 5
Methanol_Oxidation 3
Methylotrophy 3
Ureolysis 3
Dark_Iron_Oxidation 2
Sulfite_Respiration 1
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Nitrogen_Fixation 1
Nitrite_Respiration 1
Human_Pathogens_Nosocomia 1
Iron_Respiration 1
Intracellular_Parasites 1
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