SRR19150913 - Musca domestica

Basic Information

Run: SRR19150913

Assay Type: WCS

Biosample: SAMN28158643

Bytes: 14308233

Center Name: SHANDONG FIRST MEDICAL UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA836338

Quality Control Information

Filter Percentage: 1.0

QC Average Length: 250

Retained Reads: 0

Geographic Information

Country: China

Continent: Asia

Location Name: China: Shandong,Taian

Latitude/Longitude: not applicable

Sample Information

Host: Musca domestica

Isolation: -

Biosample Model: -

Collection Date: -

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR19150913
13.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 54
Aerobic_Chemoheterotrophy 44
Nitrate_Reduction 34
Human_Pathogens_All 30
Human_Associated 30
Animal_Parasites_Or_Symbionts 30
Nitrate_Respiration 27
Nitrogen_Respiration 27
Fermentation 17
Human_Pathogens_Septicemia 1
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