SRR19147676 - Gromphadorhina portentosa

Basic Information

Run: SRR19147676

Assay Type: AMPLICON

Biosample: SAMN28111782

Bytes: 28676074

Center Name: HELMHOLTZ CENTRE FOR INFECTION RESEARCH, HZI

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA835815

Geographic Information

Country: Germany

Continent: Europe

Location Name: Germany: Giessen

Latitude/Longitude: 50.5697 N 8.6729 E

Sample Information

Host: Gromphadorhina portentosa

Isolation: -

Biosample Model: -

Collection Date: 2019-01-01

Host Sex: male

Environmental Information

Broad Scale: Insect-associated microbiome

Local Scale: Insect-associated gut microbiome

Medium: Blaberidae hindgut microbiome

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR19147676
27.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 67
Fermentation 38
Respiration_Of_Sulfur_Compounds 31
Sulfate_Respiration 30
Methanogenesis 10
Dark_Hydrogen_Oxidation 10
Aerobic_Chemoheterotrophy 9
Human_Gut 9
Human_Associated 9
Mammal_Gut 9
Animal_Parasites_Or_Symbionts 9
Hydrogenotrophic_Methanogenesis 7
Methanogenesis_By_Disproportionation_Of_Methyl_Groups 3
Methanogenesis_By_Co2_Reduction_With_H2 3
Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2 3
Methylotrophy 3
Sulfite_Respiration 2
Sulfur_Respiration 1
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Nitrite_Respiration 1
Aromatic_Compound_Degradation 1
Nitrate_Respiration 1
Nitrate_Reduction 1
Nitrogen_Respiration 1
Intracellular_Parasites 1
Plastic_Degradation 1
Ureolysis 1
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