SRR19147675 - Gromphadorhina portentosa

Basic Information

Run: SRR19147675

Assay Type: AMPLICON

Biosample: SAMN28111795

Bytes: 13859130

Center Name: HELMHOLTZ CENTRE FOR INFECTION RESEARCH, HZI

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA835815

Geographic Information

Country: Germany

Continent: Europe

Location Name: Germany: Giessen

Latitude/Longitude: 50.5697 N 8.6729 E

Sample Information

Host: Gromphadorhina portentosa

Isolation: -

Biosample Model: -

Collection Date: 2019-01-01

Host Sex: female

Environmental Information

Broad Scale: Insect-associated microbiome

Local Scale: Insect-associated gut microbiome

Medium: Blaberidae midgut microbiome

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR19147675
13.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 51
Aerobic_Chemoheterotrophy 28
Fermentation 23
Human_Pathogens_All 18
Human_Associated 18
Animal_Parasites_Or_Symbionts 18
Nitrate_Respiration 18
Nitrate_Reduction 18
Nitrogen_Respiration 18
Intracellular_Parasites 5
Ureolysis 5
Aromatic_Compound_Degradation 3
Plant_Pathogen 1
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