SRR1914365 - Helicoverpa armigera

Basic Information

Run: SRR1914365

Assay Type: AMPLICON

Biosample: SAMN03400168

Bytes: 221809928

Center Name: KERALA AGRICULTURAL UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA277958

Geographic Information

Country: India

Continent: Asia

Location Name: India: VELLANIKKARA, THRISSUR,KERALA

Latitude/Longitude: 10.5465 N 76.28570000 E

Sample Information

Host: Helicoverpa armigera

Isolation: -

Biosample Model: -

Collection Date: 2014-09-30

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR1914365

211.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 153

Chemoheterotrophy

Aerobic_Chemoheterotrophy 108

Aerobic_Chemoheterotrophy

Fermentation 37

Fermentation

Nitrate_Reduction 25

Nitrate_Reduction

Aromatic_Compound_Degradation 22

Aromatic_Compound_Degradation

Animal_Parasites_Or_Symbionts 12

Animal_Parasites_Or_Symbionts

Ureolysis 12

Ureolysis

Human_Associated 9

Human_Associated

Nitrate_Respiration 8

Nitrate_Respiration

Nitrogen_Respiration 8

Nitrogen_Respiration

Phototrophy 7

Phototrophy

Human_Pathogens_All 6

Human_Pathogens_All

Photoautotrophy 6

Photoautotrophy

Respiration_Of_Sulfur_Compounds 5

Respiration_Of_Sulfur_Compounds

Predatory_Or_Exoparasitic 5

Predatory_Or_Exoparasitic

Photosynthetic_Cyanobacteria 5

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 5

Oxygenic_Photoautotrophy

Sulfate_Respiration 4

Sulfate_Respiration

Methanol_Oxidation 3

Methanol_Oxidation

Methylotrophy 3

Methylotrophy

Thiosulfate_Respiration 3

Thiosulfate_Respiration

Human_Gut 3

Human_Gut

Mammal_Gut 3

Mammal_Gut

Sulfite_Respiration 2

Sulfite_Respiration

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Chitinolysis 2

Chitinolysis

Nitrogen_Fixation 2

Nitrogen_Fixation

Nitrite_Respiration 2

Nitrite_Respiration

Human_Pathogens_Nosocomia 2

Human_Pathogens_Nosocomia

Hydrocarbon_Degradation 2

Hydrocarbon_Degradation

Iron_Respiration 2

Iron_Respiration

Nonphotosynthetic_Cyanobacteria 2

Nonphotosynthetic_Cyanobacteria

Photoheterotrophy 2

Photoheterotrophy

Aerobic_Ammonia_Oxidation 1

Aerobic_Ammonia_Oxidation

Nitrification 1

Nitrification

Arsenate_Detoxification 1

Arsenate_Detoxification

Dissimilatory_Arsenate_Reduction 1

Dissimilatory_Arsenate_Reduction

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_Septicemia 1

Human_Pathogens_Septicemia

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Fumarate_Respiration 1

Fumarate_Respiration

Intracellular_Parasites 1

Intracellular_Parasites

Anoxygenic_Photoautotrophy 1

Anoxygenic_Photoautotrophy

Aerobic_Anoxygenic_Phototrophy 1

Aerobic_Anoxygenic_Phototrophy

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