SRR18635388 - Cerartitis capitata

Basic Information

Run: SRR18635388

Assay Type: AMPLICON

Biosample: SAMN27302719

Bytes: 15034462

Center Name: UNIVERSITY OF PATRAS

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: SINGLE

Bioproject: PRJNA822871

Quality Control Information

Filter Percentage: 0.0

QC Average Length: -

Retained Reads: 81489

Geographic Information

Country: Spain

Continent: Europe

Location Name: Spain:Valencia

Latitude/Longitude: 39.520895 N 0.334336 W

Sample Information

Host: Cerartitis capitata

Isolation: -

Biosample Model: -

Collection Date: 1905-07-11

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR18635388

14.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 36

Chemoheterotrophy

Aerobic_Chemoheterotrophy 26

Aerobic_Chemoheterotrophy

Fermentation 8

Fermentation

Aromatic_Compound_Degradation 7

Aromatic_Compound_Degradation

Nitrate_Reduction 7

Nitrate_Reduction

Human_Associated 4

Human_Associated

Animal_Parasites_Or_Symbionts 4

Animal_Parasites_Or_Symbionts

Human_Pathogens_All 3

Human_Pathogens_All

Ureolysis 3

Ureolysis

Human_Gut 2

Human_Gut

Mammal_Gut 2

Mammal_Gut

Nitrate_Respiration 2

Nitrate_Respiration

Nitrogen_Respiration 2

Nitrogen_Respiration

Methanol_Oxidation 1

Methanol_Oxidation

Methylotrophy 1

Methylotrophy

Plant_Pathogen 1

Plant_Pathogen

Aliphatic_Non_Methane_Hydrocarbon_Degradation 1

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Iron_Respiration 1

Iron_Respiration

Intracellular_Parasites 1

Intracellular_Parasites

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

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