SRR18635357 - Cerartitis capitata

Basic Information

Run: SRR18635357

Assay Type: AMPLICON

Biosample: SAMN27302704

Bytes: 7755399

Center Name: UNIVERSITY OF PATRAS

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: SINGLE

Bioproject: PRJNA822871

Quality Control Information

Filter Percentage: 0.0

QC Average Length: 463

Retained Reads: 42228

Geographic Information

Country: Spain

Continent: Europe

Location Name: Spain:Valencia

Latitude/Longitude: 39.520895 N 0.334336 W

Sample Information

Host: Cerartitis capitata

Isolation: -

Biosample Model: -

Collection Date: 1905-07-11

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR18635357

7.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 28

Chemoheterotrophy

Aerobic_Chemoheterotrophy 20

Aerobic_Chemoheterotrophy

Nitrate_Reduction 9

Nitrate_Reduction

Fermentation 6

Fermentation

Nitrate_Respiration 6

Nitrate_Respiration

Nitrogen_Respiration 6

Nitrogen_Respiration

Human_Pathogens_All 5

Human_Pathogens_All

Human_Associated 5

Human_Associated

Animal_Parasites_Or_Symbionts 5

Animal_Parasites_Or_Symbionts

Methanol_Oxidation 3

Methanol_Oxidation

Methylotrophy 3

Methylotrophy

Aromatic_Compound_Degradation 3

Aromatic_Compound_Degradation

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Nitrite_Respiration 2

Nitrite_Respiration

Plant_Pathogen 1

Plant_Pathogen

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

Ureolysis 1

Ureolysis

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