SRR18635354 - Cerartitis capitata

Basic Information

Run: SRR18635354

Assay Type: AMPLICON

Biosample: SAMN27302707

Bytes: 10914643

Center Name: UNIVERSITY OF PATRAS

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: SINGLE

Bioproject: PRJNA822871

Geographic Information

Country: Spain

Continent: Europe

Location Name: Spain:Valencia

Latitude/Longitude: 39.520895 N 0.334336 W

Sample Information

Host: Cerartitis capitata

Isolation: -

Biosample Model: -

Collection Date: 1905-07-11

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR18635354

10.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 58

Chemoheterotrophy

Aerobic_Chemoheterotrophy 49

Aerobic_Chemoheterotrophy

Nitrate_Reduction 14

Nitrate_Reduction

Nitrogen_Respiration 10

Nitrogen_Respiration

Nitrate_Respiration 9

Nitrate_Respiration

Fermentation 7

Fermentation

Human_Associated 6

Human_Associated

Animal_Parasites_Or_Symbionts 6

Animal_Parasites_Or_Symbionts

Aromatic_Compound_Degradation 6

Aromatic_Compound_Degradation

Nitrite_Respiration 5

Nitrite_Respiration

Human_Pathogens_All 5

Human_Pathogens_All

Methanol_Oxidation 4

Methanol_Oxidation

Methylotrophy 4

Methylotrophy

Nitrate_Denitrification 4

Nitrate_Denitrification

Nitrite_Denitrification 4

Nitrite_Denitrification

Denitrification 4

Denitrification

Dark_Hydrogen_Oxidation 4

Dark_Hydrogen_Oxidation

Nitrogen_Fixation 4

Nitrogen_Fixation

Ureolysis 3

Ureolysis

Aromatic_Hydrocarbon_Degradation 2

Aromatic_Hydrocarbon_Degradation

Hydrocarbon_Degradation 2

Hydrocarbon_Degradation

Predatory_Or_Exoparasitic 2

Predatory_Or_Exoparasitic

Photosynthetic_Cyanobacteria 2

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 2

Oxygenic_Photoautotrophy

Photoautotrophy 2

Photoautotrophy

Phototrophy 2

Phototrophy

Nitrite_Ammonification 1

Nitrite_Ammonification

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Gut 1

Human_Gut

Mammal_Gut 1

Mammal_Gut

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

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