SRR18635353 - Cerartitis capitata

Basic Information

Run: SRR18635353

Assay Type: AMPLICON

Biosample: SAMN27302708

Bytes: 20030046

Center Name: UNIVERSITY OF PATRAS

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: SINGLE

Bioproject: PRJNA822871

Quality Control Information

Filter Percentage: 0.0

QC Average Length: -

Retained Reads: 108188

Geographic Information

Country: Spain

Continent: Europe

Location Name: Spain:Valencia

Latitude/Longitude: 39.520895 N 0.334336 W

Sample Information

Host: Cerartitis capitata

Isolation: -

Biosample Model: -

Collection Date: 1905-07-11

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR18635353

19.1 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 67

Chemoheterotrophy

Aerobic_Chemoheterotrophy 50

Aerobic_Chemoheterotrophy

Fermentation 16

Fermentation

Nitrate_Reduction 13

Nitrate_Reduction

Human_Associated 11

Human_Associated

Animal_Parasites_Or_Symbionts 11

Animal_Parasites_Or_Symbionts

Human_Pathogens_All 9

Human_Pathogens_All

Aromatic_Compound_Degradation 8

Aromatic_Compound_Degradation

Nitrogen_Respiration 8

Nitrogen_Respiration

Nitrate_Respiration 7

Nitrate_Respiration

Ureolysis 5

Ureolysis

Nitrogen_Fixation 3

Nitrogen_Fixation

Nitrite_Respiration 3

Nitrite_Respiration

Human_Gut 3

Human_Gut

Mammal_Gut 3

Mammal_Gut

Methanol_Oxidation 2

Methanol_Oxidation

Methylotrophy 2

Methylotrophy

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Predatory_Or_Exoparasitic 2

Predatory_Or_Exoparasitic

Nonphotosynthetic_Cyanobacteria 2

Nonphotosynthetic_Cyanobacteria

Nitrite_Ammonification 1

Nitrite_Ammonification

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

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