SRR18635346 - Cerartitis capitata

Basic Information

Run: SRR18635346

Assay Type: AMPLICON

Biosample: SAMN27302714

Bytes: 34906896

Center Name: UNIVERSITY OF PATRAS

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: SINGLE

Bioproject: PRJNA822871

Geographic Information

Country: Spain

Continent: Europe

Location Name: Spain:Valencia

Latitude/Longitude: 39.520895 N 0.334336 W

Sample Information

Host: Cerartitis capitata

Isolation: -

Biosample Model: -

Collection Date: 1905-07-11

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR18635346

33.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 86

Chemoheterotrophy

Aerobic_Chemoheterotrophy 59

Aerobic_Chemoheterotrophy

Fermentation 28

Fermentation

Nitrate_Reduction 18

Nitrate_Reduction

Animal_Parasites_Or_Symbionts 10

Animal_Parasites_Or_Symbionts

Human_Associated 7

Human_Associated

Aromatic_Compound_Degradation 7

Aromatic_Compound_Degradation

Nitrate_Respiration 7

Nitrate_Respiration

Nitrogen_Respiration 7

Nitrogen_Respiration

Human_Pathogens_All 6

Human_Pathogens_All

Ureolysis 5

Ureolysis

Methanol_Oxidation 3

Methanol_Oxidation

Methylotrophy 3

Methylotrophy

Dark_Hydrogen_Oxidation 3

Dark_Hydrogen_Oxidation

Nitrogen_Fixation 3

Nitrogen_Fixation

Nonphotosynthetic_Cyanobacteria 3

Nonphotosynthetic_Cyanobacteria

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Nitrite_Respiration 2

Nitrite_Respiration

Human_Gut 2

Human_Gut

Mammal_Gut 2

Mammal_Gut

Aromatic_Hydrocarbon_Degradation 2

Aromatic_Hydrocarbon_Degradation

Hydrocarbon_Degradation 2

Hydrocarbon_Degradation

Intracellular_Parasites 2

Intracellular_Parasites

Photosynthetic_Cyanobacteria 2

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 2

Oxygenic_Photoautotrophy

Photoautotrophy 2

Photoautotrophy

Phototrophy 2

Phototrophy

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Plant_Pathogen 1

Plant_Pathogen

Iron_Respiration 1

Iron_Respiration

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

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