SRR18573198 - corn

Basic Information

Run: SRR18573198

Assay Type: AMPLICON

Biosample: SAMN27112532

Bytes: 30708247

Center Name: UNIVERSITY OF NEBRASKA AT OMAHA

Classification: 16S

Sequencing Information

Instrument: Illumina MiniSeq

Library Layout: PAIRED

Bioproject: PRJNA821530

Geographic Information

Country: USA

Continent: North America

Location Name: USA

Sample Information

Host: corn

Isolation: -

Biosample Model: -

Collection Date: 2024-07-21

Host Sex: -

Environmental Information

Broad Scale: pest of corn

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR18573198
29.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 9
Aerobic_Chemoheterotrophy 6
Fermentation 2
Human_Pathogens_All 1
Human_Associated 1
Animal_Parasites_Or_Symbionts 1
Aromatic_Compound_Degradation 1
Nitrate_Respiration 1
Nitrate_Reduction 1
Nitrogen_Respiration 1
Back to Amplicons List
Back to Table