SRR18573195 - corn

Basic Information

Run: SRR18573195

Assay Type: AMPLICON

Biosample: SAMN27112532

Bytes: 32815490

Center Name: UNIVERSITY OF NEBRASKA AT OMAHA

Classification: 16S

Sequencing Information

Instrument: Illumina MiniSeq

Library Layout: PAIRED

Bioproject: PRJNA821530

Geographic Information

Country: USA

Continent: North America

Location Name: USA

Sample Information

Host: corn

Isolation: -

Biosample Model: -

Collection Date: 2024-07-21

Host Sex: -

Environmental Information

Broad Scale: pest of corn

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR18573195
31.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 17
Aerobic_Chemoheterotrophy 16
Methanol_Oxidation 2
Methylotrophy 2
Aromatic_Compound_Degradation 2
Nitrate_Respiration 2
Nitrate_Reduction 2
Nitrogen_Respiration 2
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Dark_Hydrogen_Oxidation 1
Nitrite_Respiration 1
Human_Pathogens_All 1
Human_Associated 1
Animal_Parasites_Or_Symbionts 1
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