SRR18283687 - None

Basic Information

Run: SRR18283687

Assay Type: RNA-Seq

Biosample: SAMN26547099

Bytes: 5479656305

Center Name: UNIVERSITE LAVAL

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA814308

Geographic Information

Country: Canada

Continent: North America

Location Name: Canada: Quebec, IBIS

Sample Information

Host: -

Isolation: -

Biosample Model: -

Collection Date: 2024-09-19

Host Sex: -

Environmental Information

Broad Scale: Conventional condition

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR18283687
5.1 GB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Nitrate_Reduction 1329
Chemoheterotrophy 26
Aerobic_Chemoheterotrophy 15
Fermentation 9
Nitrogen_Fixation 4
Aromatic_Compound_Degradation 3
Ureolysis 3
Methanol_Oxidation 2
Methylotrophy 2
Aromatic_Hydrocarbon_Degradation 1
Hydrocarbon_Degradation 1
Predatory_Or_Exoparasitic 1
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