SRR17819062 - Canis lupus familiaris

Basic Information

Run: SRR17819062

Assay Type: AMPLICON

Biosample: SAMN25408377

Bytes: 67815496

Center Name: UNIVERSITY OF ARIZONA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA801881

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Arizona, Maricopa

Sample Information

Host: Canis lupus familiaris

Isolation: -

Biosample Model: -

Collection Date: 2019-07-17

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR17819062
64.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 55
Human_Associated 43
Animal_Parasites_Or_Symbionts 43
Human_Pathogens_All 42
Intracellular_Parasites 39
Aerobic_Chemoheterotrophy 35
Nitrate_Reduction 26
Ureolysis 15
Methanol_Oxidation 14
Methylotrophy 14
Phototrophy 14
Fermentation 10
Photosynthetic_Cyanobacteria 10
Oxygenic_Photoautotrophy 10
Photoautotrophy 10
Aromatic_Compound_Degradation 4
Photoheterotrophy 4
Human_Gut 2
Mammal_Gut 2
Aromatic_Hydrocarbon_Degradation 2
Hydrocarbon_Degradation 2
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Nitrite_Respiration 1
Nitrate_Respiration 1
Nitrogen_Respiration 1
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