SRR17819023 - Canis lupus familiaris

Basic Information

Run: SRR17819023

Assay Type: AMPLICON

Biosample: SAMN25408412

Bytes: 48487197

Center Name: UNIVERSITY OF ARIZONA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA801881

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Arizona, Pima

Sample Information

Host: Canis lupus familiaris

Isolation: -

Biosample Model: -

Collection Date: 2019-06-19

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR17819023
46.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Human_Associated 101
Animal_Parasites_Or_Symbionts 101
Human_Pathogens_All 100
Intracellular_Parasites 99
Chemoheterotrophy 77
Aerobic_Chemoheterotrophy 43
Ureolysis 26
Methylotrophy 25
Methanol_Oxidation 24
Nitrate_Reduction 12
Fermentation 11
Phototrophy 11
Photosynthetic_Cyanobacteria 9
Oxygenic_Photoautotrophy 9
Photoautotrophy 9
Aromatic_Compound_Degradation 5
Hydrocarbon_Degradation 4
Aromatic_Hydrocarbon_Degradation 3
Chitinolysis 2
Manganese_Oxidation 2
Human_Gut 2
Mammal_Gut 2
Photoheterotrophy 2
Methanotrophy 1
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Nitrogen_Fixation 1
Nitrite_Respiration 1
Xylanolysis 1
Plant_Pathogen 1
Nitrate_Respiration 1
Nitrogen_Respiration 1
Nonphotosynthetic_Cyanobacteria 1
Back to Amplicons List
Back to Table