SRR17819009 - Canis lupus familiaris

Basic Information

Run: SRR17819009

Assay Type: AMPLICON

Biosample: SAMN25408425

Bytes: 38939922

Center Name: UNIVERSITY OF ARIZONA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA801881

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Arizona, Pinal

Sample Information

Host: Canis lupus familiaris

Isolation: -

Biosample Model: -

Collection Date: 2019-07-11

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR17819009
37.1 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 66
Aerobic_Chemoheterotrophy 31
Nitrate_Reduction 25
Animal_Parasites_Or_Symbionts 24
Fermentation 23
Human_Pathogens_All 23
Human_Associated 23
Intracellular_Parasites 19
Methanol_Oxidation 14
Methylotrophy 14
Ureolysis 14
Phototrophy 6
Photosynthetic_Cyanobacteria 5
Oxygenic_Photoautotrophy 5
Photoautotrophy 5
Aromatic_Compound_Degradation 2
Nitrate_Respiration 2
Nitrogen_Respiration 2
Xylanolysis 1
Photoheterotrophy 1
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