SRR17761961 - Musca_domestica

Basic Information

Run: SRR17761961

Assay Type: AMPLICON

Biosample: SAMN25276336

Bytes: 95071173

Center Name: AGRICULTURAL RESEARCH COUNCIL

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA800672

Quality Control Information

Filter Percentage: 1.0

QC Average Length: -

Retained Reads: 0

Geographic Information

Country: South Africa

Continent: Africa

Location Name: South Africa

Sample Information

Host: Musca_domestica

Isolation: -

Biosample Model: -

Collection Date: 2019-09-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR17761961
90.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 178
Fermentation 115
Aerobic_Chemoheterotrophy 65
Aromatic_Compound_Degradation 33
Nitrate_Reduction 26
Animal_Parasites_Or_Symbionts 18
Human_Associated 17
Ureolysis 16
Human_Gut 11
Mammal_Gut 11
Human_Pathogens_All 9
Human_Pathogens_Diarrhea 5
Human_Pathogens_Septicemia 3
Methanol_Oxidation 2
Methylotrophy 2
Human_Pathogens_Pneumonia 2
Arsenate_Detoxification 1
Dissimilatory_Arsenate_Reduction 1
Plant_Pathogen 1
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