SRR17761958 - Musca_domestica

Basic Information

Run: SRR17761958

Assay Type: AMPLICON

Biosample: SAMN25276376

Bytes: 40700360

Center Name: AGRICULTURAL RESEARCH COUNCIL

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA800672

Quality Control Information

Filter Percentage: 1.0

QC Average Length: 299

Retained Reads: 0

Geographic Information

Country: South Africa

Continent: Africa

Location Name: South Africa

Sample Information

Host: Musca_domestica

Isolation: -

Biosample Model: -

Collection Date: 2019-12-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR17761958

38.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 74

Chemoheterotrophy

Fermentation 56

Fermentation

Aerobic_Chemoheterotrophy 18

Aerobic_Chemoheterotrophy

Nitrate_Reduction 13

Nitrate_Reduction

Human_Associated 12

Human_Associated

Animal_Parasites_Or_Symbionts 12

Animal_Parasites_Or_Symbionts

Human_Pathogens_All 11

Human_Pathogens_All

Aromatic_Compound_Degradation 5

Aromatic_Compound_Degradation

Human_Pathogens_Septicemia 3

Human_Pathogens_Septicemia

Human_Pathogens_Pneumonia 3

Human_Pathogens_Pneumonia

Human_Pathogens_Nosocomia 3

Human_Pathogens_Nosocomia

Human_Gut 2

Human_Gut

Mammal_Gut 2

Mammal_Gut

Ureolysis 2

Ureolysis

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrite_Respiration 1

Nitrite_Respiration

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Nitrate_Respiration 1

Nitrate_Respiration

Nitrogen_Respiration 1

Nitrogen_Respiration

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

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