SRR17761929 - Musca_domestica

Basic Information

Run: SRR17761929

Assay Type: AMPLICON

Biosample: SAMN25276354

Bytes: 89176003

Center Name: AGRICULTURAL RESEARCH COUNCIL

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA800672

Quality Control Information

Filter Percentage: 1.0

QC Average Length: -

Retained Reads: 0

Geographic Information

Country: South Africa

Continent: Africa

Location Name: South Africa

Sample Information

Host: Musca_domestica

Isolation: -

Biosample Model: -

Collection Date: 2019-09-10

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR17761929

85.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 135

Chemoheterotrophy

Aerobic_Chemoheterotrophy 73

Aerobic_Chemoheterotrophy

Fermentation 62

Fermentation

Nitrate_Reduction 23

Nitrate_Reduction

Ureolysis 19

Ureolysis

Animal_Parasites_Or_Symbionts 17

Animal_Parasites_Or_Symbionts

Aromatic_Compound_Degradation 15

Aromatic_Compound_Degradation

Human_Associated 14

Human_Associated

Human_Pathogens_All 13

Human_Pathogens_All

Nitrate_Respiration 5

Nitrate_Respiration

Nitrogen_Respiration 5

Nitrogen_Respiration

Methanol_Oxidation 4

Methanol_Oxidation

Methylotrophy 4

Methylotrophy

Human_Pathogens_Diarrhea 4

Human_Pathogens_Diarrhea

Human_Pathogens_Septicemia 3

Human_Pathogens_Septicemia

Human_Pathogens_Pneumonia 3

Human_Pathogens_Pneumonia

Human_Gut 3

Human_Gut

Mammal_Gut 3

Mammal_Gut

Predatory_Or_Exoparasitic 2

Predatory_Or_Exoparasitic

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrogen_Fixation 1

Nitrogen_Fixation

Nitrite_Respiration 1

Nitrite_Respiration

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Iron_Respiration 1

Iron_Respiration

Intracellular_Parasites 1

Intracellular_Parasites

Photoheterotrophy 1

Photoheterotrophy

Phototrophy 1

Phototrophy

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