SRR17761917 - Musca_domestica

Basic Information

Run: SRR17761917

Assay Type: AMPLICON

Biosample: SAMN25276365

Bytes: 53469275

Center Name: AGRICULTURAL RESEARCH COUNCIL

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA800672

Geographic Information

Country: South Africa

Continent: Africa

Location Name: South Africa

Sample Information

Host: Musca_domestica

Isolation: -

Biosample Model: -

Collection Date: 2019-11-30

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download

OTU Sequences

FASTA file of OTU sequences

Download

FAPROTAX Report

Functional annotation of Amplicon

Download

VSEARCH Taxon

VSEARCH taxonomic composition classification

Download

QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR17761917

51.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 42

Chemoheterotrophy

Fermentation 32

Fermentation

Aerobic_Chemoheterotrophy 11

Aerobic_Chemoheterotrophy

Intracellular_Parasites 6

Intracellular_Parasites

Human_Associated 5

Human_Associated

Animal_Parasites_Or_Symbionts 5

Animal_Parasites_Or_Symbionts

Human_Pathogens_All 4

Human_Pathogens_All

Human_Gut 4

Human_Gut

Mammal_Gut 4

Mammal_Gut

Aromatic_Compound_Degradation 3

Aromatic_Compound_Degradation

Nitrate_Reduction 3

Nitrate_Reduction

Ureolysis 2

Ureolysis

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrite_Respiration 1

Nitrite_Respiration

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_Septicemia 1

Human_Pathogens_Septicemia

Human_Pathogens_Pneumonia 1

Human_Pathogens_Pneumonia

Human_Pathogens_Diarrhea 1

Human_Pathogens_Diarrhea

Nitrate_Respiration 1

Nitrate_Respiration

Nitrogen_Respiration 1

Nitrogen_Respiration

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

Back to Amplicons List

Back to Table