SRR17761916 - Musca_domestica

Basic Information

Run: SRR17761916

Assay Type: AMPLICON

Biosample: SAMN25276339

Bytes: 54750695

Center Name: AGRICULTURAL RESEARCH COUNCIL

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA800672

Quality Control Information

Filter Percentage: 1.0

QC Average Length: -

Retained Reads: 0

Geographic Information

Country: South Africa

Continent: Africa

Location Name: South Africa

Sample Information

Host: Musca_domestica

Isolation: -

Biosample Model: -

Collection Date: 2019-09-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR17761916
52.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 90
Fermentation 75
Nitrate_Reduction 28
Aerobic_Chemoheterotrophy 18
Animal_Parasites_Or_Symbionts 16
Ureolysis 16
Human_Associated 15
Human_Pathogens_All 9
Human_Gut 9
Mammal_Gut 9
Human_Pathogens_Diarrhea 7
Human_Pathogens_Septicemia 2
Human_Pathogens_Pneumonia 2
Back to Amplicons List
Back to Table