SRR17677301 - Citrus sinensis

Basic Information

Run: SRR17677301

Assay Type: AMPLICON

Biosample: SAMN25125463

Bytes: 114509297

Center Name: UNIVERSITY OF CALIFORNIA, RIVERSIDE

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA685913

Geographic Information

Country: USA

Continent: North America

Sample Information

Host: Citrus sinensis

Isolation: -

Biosample Model: -

Collection Date: 2019-03-12

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download

OTU Sequences

FASTA file of OTU sequences

Download

FAPROTAX Report

Functional annotation of Amplicon

Download

VSEARCH Taxon

VSEARCH taxonomic composition classification

Download

QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR17677301

109.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

No functional annotation data available

Back to Amplicons List

Back to Table