SRR17221681 - Aedes aegypti

Basic Information

Run: SRR17221681

Assay Type: AMPLICON

Biosample: SAMN23829481

Bytes: 29649106

Center Name: CONNECTICUT AGRICULTURAL EXPERIMENT STATION

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA787624

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Connecticut

Latitude/Longitude: 41.33132151 N 72.91913370 W

Sample Information

Host: Aedes aegypti

Isolation: -

Biosample Model: -

Collection Date: 2018-06-01

Host Sex: female

Environmental Information

Broad Scale: animal associated

Local Scale: midgut

Medium: midget contents

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR17221681
28.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 9
Aerobic_Chemoheterotrophy 6
Nitrate_Reduction 4
Fermentation 3
Human_Pathogens_All 1
Human_Associated 1
Animal_Parasites_Or_Symbionts 1
Nitrate_Respiration 1
Nitrogen_Respiration 1
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