SRR16109780 - Dicentrarchus labrax

Basic Information

Run: SRR16109780

Assay Type: AMPLICON

Biosample: SAMN21893839

Bytes: 1554550

Center Name: JMF

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA767204

Geographic Information

Country: Portugal

Continent: Europe

Location Name: Portugal: Porto

Latitude/Longitude: 41.1636 N 8.6866 W

Sample Information

Host: Dicentrarchus labrax

Isolation: -

Biosample Model: -

Collection Date: 2019-07-04

Host Sex: -

Environmental Information

Broad Scale: fish

Local Scale: gut

Medium: gut mucosa

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR16109780
1.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 9
Aerobic_Chemoheterotrophy 7
Aromatic_Compound_Degradation 4
Ureolysis 2
Methanol_Oxidation 1
Methylotrophy 1
Fermentation 1
Aromatic_Hydrocarbon_Degradation 1
Hydrocarbon_Degradation 1
Nitrate_Reduction 1
Nonphotosynthetic_Cyanobacteria 1
Photosynthetic_Cyanobacteria 1
Oxygenic_Photoautotrophy 1
Photoautotrophy 1
Phototrophy 1
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