SRR16109779 - Dicentrarchus labrax

Basic Information

Run: SRR16109779

Assay Type: AMPLICON

Biosample: SAMN21893823

Bytes: 4723033

Center Name: JMF

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA767204

Quality Control Information

Filter Percentage: 1.0

QC Average Length: -

Retained Reads: 0

Geographic Information

Country: Portugal

Continent: Europe

Location Name: Portugal: Porto

Latitude/Longitude: 41.1636 N 8.6866 W

Sample Information

Host: Dicentrarchus labrax

Isolation: -

Biosample Model: -

Collection Date: 2019-07-04

Host Sex: -

Environmental Information

Broad Scale: fish

Local Scale: gut

Medium: gut digesta

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download

OTU Sequences

FASTA file of OTU sequences

Download

FAPROTAX Report

Functional annotation of Amplicon

Download

VSEARCH Taxon

VSEARCH taxonomic composition classification

Download

QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR16109779

4.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 16

Chemoheterotrophy

Aerobic_Chemoheterotrophy 13

Aerobic_Chemoheterotrophy

Aromatic_Compound_Degradation 4

Aromatic_Compound_Degradation

Nitrate_Reduction 4

Nitrate_Reduction

Nitrate_Respiration 3

Nitrate_Respiration

Nitrogen_Respiration 3

Nitrogen_Respiration

Fermentation 2

Fermentation

Human_Pathogens_All 2

Human_Pathogens_All

Human_Associated 2

Human_Associated

Animal_Parasites_Or_Symbionts 2

Animal_Parasites_Or_Symbionts

Ureolysis 2

Ureolysis

Methanol_Oxidation 1

Methanol_Oxidation

Methylotrophy 1

Methylotrophy

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrogen_Fixation 1

Nitrogen_Fixation

Nitrite_Respiration 1

Nitrite_Respiration

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

Back to Amplicons List

Back to Table