SRR16087858 - Scirpophaga incertulas

Basic Information

Run: SRR16087858

Assay Type: AMPLICON

Biosample: SAMN21619423

Bytes: 45998529

Center Name: UNIVERSITI MALAYSIA SARAWAK

Classification: 16S

Sequencing Information

Instrument: Ion Torrent S5 XL

Library Layout: SINGLE

Bioproject: PRJNA766140

Geographic Information

Country: Malaysia

Continent: Asia

Location Name: Malaysia: Sarawak

Latitude/Longitude: not collected

Sample Information

Host: Scirpophaga incertulas

Isolation: -

Biosample Model: -

Collection Date: 2018-04-08

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR16087858
43.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 106
Aerobic_Chemoheterotrophy 100
Nitrate_Reduction 47
Human_Pathogens_All 43
Human_Associated 43
Animal_Parasites_Or_Symbionts 43
Nitrate_Respiration 41
Nitrogen_Respiration 41
Aromatic_Compound_Degradation 26
Fermentation 6
Human_Pathogens_Septicemia 1
Human_Pathogens_Pneumonia 1
Human_Pathogens_Nosocomia 1
Plant_Pathogen 1
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