SRR16087826 - Scirpophaga incertulas

Basic Information

Run: SRR16087826

Assay Type: AMPLICON

Biosample: SAMN21619452

Bytes: 40165753

Center Name: UNIVERSITI MALAYSIA SARAWAK

Classification: 16S

Sequencing Information

Instrument: Ion Torrent S5 XL

Library Layout: SINGLE

Bioproject: PRJNA766140

Geographic Information

Country: Malaysia

Continent: Asia

Location Name: Malaysia: Sarawak

Latitude/Longitude: not collected

Sample Information

Host: Scirpophaga incertulas

Isolation: -

Biosample Model: -

Collection Date: 2018-02-13

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR16087826
38.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 71
Aerobic_Chemoheterotrophy 59
Nitrate_Reduction 23
Human_Pathogens_All 22
Human_Associated 22
Animal_Parasites_Or_Symbionts 22
Nitrate_Respiration 22
Nitrogen_Respiration 22
Fermentation 13
Plant_Pathogen 1
Aromatic_Compound_Degradation 1
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