SRR15655172 - None

Basic Information

Run: SRR15655172

Assay Type: AMPLICON

Biosample: SAMN21024327

Bytes: 20717689

Center Name: USDA-ARS

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA758387

Geographic Information

Country: Panama

Continent: North America

Location Name: Panama: Jaque, Darien

Latitude/Longitude: 7.56151 N 78.13128 W

Sample Information

Host: -

Isolation: -

Biosample Model: -

Collection Date: 2019-09-18

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR15655172
19.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 116
Fermentation 101
Animal_Parasites_Or_Symbionts 27
Human_Associated 20
Aerobic_Chemoheterotrophy 15
Human_Gut 15
Mammal_Gut 15
Nitrate_Reduction 11
Human_Pathogens_All 7
Ureolysis 5
Dark_Hydrogen_Oxidation 4
Hydrogenotrophic_Methanogenesis 3
Methanogenesis 3
Aromatic_Compound_Degradation 3
Nitrate_Respiration 3
Nitrogen_Respiration 3
Methanogenesis_By_Co2_Reduction_With_H2 2
Methanol_Oxidation 2
Methylotrophy 2
Nitrogen_Fixation 2
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Nitrite_Respiration 1
Xylanolysis 1
Human_Pathogens_Septicemia 1
Human_Pathogens_Meningitis 1
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