SRR15655166 - None

Basic Information

Run: SRR15655166

Assay Type: AMPLICON

Biosample: SAMN21024332

Bytes: 19189530

Center Name: USDA-ARS

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA758387

Geographic Information

Country: Panama

Continent: North America

Location Name: Panama: Jaque, Darien

Latitude/Longitude: 7.52114 N 78.07874 W

Sample Information

Host: -

Isolation: -

Biosample Model: -

Collection Date: 2019-09-24

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR15655166
18.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 168
Fermentation 147
Animal_Parasites_Or_Symbionts 35
Human_Associated 32
Human_Gut 25
Mammal_Gut 25
Aerobic_Chemoheterotrophy 19
Dark_Hydrogen_Oxidation 10
Human_Pathogens_All 10
Nitrate_Reduction 10
Hydrogenotrophic_Methanogenesis 9
Methanogenesis 9
Methanogenesis_By_Co2_Reduction_With_H2 7
Nonphotosynthetic_Cyanobacteria 6
Methylotrophy 4
Chitinolysis 4
Aromatic_Compound_Degradation 4
Nitrate_Respiration 3
Nitrogen_Respiration 3
Ureolysis 3
Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2 2
Methanol_Oxidation 2
Human_Pathogens_Diarrhea 2
Reductive_Acetogenesis 2
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Nitrite_Respiration 1
Cellulolysis 1
Xylanolysis 1
Human_Pathogens_Septicemia 1
Human_Pathogens_Meningitis 1
Back to Amplicons List
Back to Table