SRR15655161 - None

Basic Information

Run: SRR15655161

Assay Type: AMPLICON

Biosample: SAMN21024337

Bytes: 21603597

Center Name: USDA-ARS

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA758387

Geographic Information

Country: Panama

Continent: North America

Location Name: Panama: Jaque, Darien

Latitude/Longitude: 7.51833 N 78.08051 W

Sample Information

Host: -

Isolation: -

Biosample Model: -

Collection Date: 2019-09-19

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR15655161

20.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 141

Chemoheterotrophy

Fermentation 112

Fermentation

Animal_Parasites_Or_Symbionts 24

Animal_Parasites_Or_Symbionts

Aerobic_Chemoheterotrophy 23

Aerobic_Chemoheterotrophy

Human_Associated 21

Human_Associated

Human_Gut 14

Human_Gut

Mammal_Gut 14

Mammal_Gut

Nitrate_Reduction 13

Nitrate_Reduction

Dark_Hydrogen_Oxidation 12

Dark_Hydrogen_Oxidation

Hydrogenotrophic_Methanogenesis 9

Hydrogenotrophic_Methanogenesis

Methanogenesis 9

Methanogenesis

Methanogenesis_By_Co2_Reduction_With_H2 8

Methanogenesis_By_Co2_Reduction_With_H2

Human_Pathogens_All 8

Human_Pathogens_All

Aromatic_Compound_Degradation 7

Aromatic_Compound_Degradation

Methylotrophy 4

Methylotrophy

Reductive_Acetogenesis 4

Reductive_Acetogenesis

Sulfate_Respiration 3

Sulfate_Respiration

Respiration_Of_Sulfur_Compounds 3

Respiration_Of_Sulfur_Compounds

Nitrate_Respiration 3

Nitrate_Respiration

Nitrogen_Respiration 3

Nitrogen_Respiration

Methanol_Oxidation 2

Methanol_Oxidation

Chitinolysis 2

Chitinolysis

Nitrogen_Fixation 2

Nitrogen_Fixation

Xylanolysis 2

Xylanolysis

Methanotrophy 1

Methanotrophy

Methanogenesis_By_Disproportionation_Of_Methyl_Groups 1

Methanogenesis_By_Disproportionation_Of_Methyl_Groups

Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2 1

Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2

Sulfite_Respiration 1

Sulfite_Respiration

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrite_Respiration 1

Nitrite_Respiration

Invertebrate_Parasites 1

Invertebrate_Parasites

Human_Pathogens_Septicemia 1

Human_Pathogens_Septicemia

Human_Pathogens_Meningitis 1

Human_Pathogens_Meningitis

Human_Pathogens_Diarrhea 1

Human_Pathogens_Diarrhea

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Anoxygenic_Photoautotrophy_S_Oxidizing 1

Anoxygenic_Photoautotrophy_S_Oxidizing

Anoxygenic_Photoautotrophy 1

Anoxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

Ureolysis 1

Ureolysis

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