SRR15305554 - Aedes aegypti

Basic Information

Run: SRR15305554

Assay Type: AMPLICON

Biosample: SAMN20496028

Bytes: 2630788

Center Name: UNIVERSITY OF CALIFORNIA, DAVIS

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA750810

Geographic Information

Country: USA

Continent: North America

Location Name: USA: California

Latitude/Longitude: 38.55519976 N 121.72640651 W

Sample Information

Host: Aedes aegypti

Isolation: -

Biosample Model: -

Collection Date: 2020-03-01

Host Sex: -

Environmental Information

Broad Scale: not applicable

Local Scale: not applicable

Medium: phosphate buffered saline

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR15305554
2.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 16
Aerobic_Chemoheterotrophy 12
Ureolysis 5
Aromatic_Compound_Degradation 3
Hydrocarbon_Degradation 3
Nitrogen_Fixation 2
Aromatic_Hydrocarbon_Degradation 2
Methanol_Oxidation 1
Methylotrophy 1
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