SRR14730776 - maize

Basic Information

Run: SRR14730776

Assay Type: AMPLICON

Biosample: SAMN19555156

Bytes: 20719333

Center Name: UNIVERSITY OF HELSINKI

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA734744

Quality Control Information

Filter Percentage: 0.0089

QC Average Length: -

Retained Reads: 277146

Geographic Information

Country: Nigeria

Continent: Africa

Location Name: Nigeria: Ibadan

Sample Information

Host: maize

Isolation: -

Biosample Model: -

Collection Date: 2019-10-14

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR14730776
19.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 75
Aerobic_Chemoheterotrophy 47
Fermentation 17
Human_Associated 14
Animal_Parasites_Or_Symbionts 14
Ureolysis 14
Methanol_Oxidation 13
Methylotrophy 13
Aromatic_Compound_Degradation 12
Human_Gut 9
Mammal_Gut 9
Human_Pathogens_All 5
Nitrate_Reduction 4
Nitrate_Denitrification 2
Nitrite_Denitrification 2
Denitrification 2
Dark_Hydrogen_Oxidation 2
Nitrogen_Fixation 2
Nitrite_Respiration 2
Nitrate_Respiration 2
Nitrogen_Respiration 2
Predatory_Or_Exoparasitic 1
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