SRR14730774 - maize

Basic Information

Run: SRR14730774

Assay Type: AMPLICON

Biosample: SAMN19555156

Bytes: 21827257

Center Name: UNIVERSITY OF HELSINKI

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA734744

Geographic Information

Country: Nigeria

Continent: Africa

Location Name: Nigeria: Ibadan

Sample Information

Host: maize

Isolation: -

Biosample Model: -

Collection Date: 2019-10-14

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR14730774
20.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 77
Aerobic_Chemoheterotrophy 55
Human_Associated 18
Animal_Parasites_Or_Symbionts 18
Aromatic_Compound_Degradation 15
Fermentation 14
Ureolysis 12
Methanol_Oxidation 11
Methylotrophy 11
Human_Pathogens_All 10
Human_Gut 9
Mammal_Gut 9
Nitrate_Reduction 3
Nitrate_Denitrification 2
Nitrite_Denitrification 2
Denitrification 2
Dark_Hydrogen_Oxidation 2
Nitrite_Respiration 2
Nitrate_Respiration 2
Nitrogen_Respiration 2
Nitrogen_Fixation 1
Predatory_Or_Exoparasitic 1
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